Publications


Selected Publications
1 - Cenik C, Cenik ES, Byeon GW, Grubert F, Candille S, Spacek D, Alsallakh B, Tilgner H, Araya CL, Tang H, Ricci E, Snyder MP. Integrative analysis of RNA, translation and protein levels reveals distinct regulatory variation across humans. Genome Research. 2015 Nov; 25(11) : 1610-21. doi: 10.1101/gr.193342.115



2 - Cenik C, Chua HN, Singh G, Akef A, Snyder MP, Palazzo AF, Moore MJ, Roth FP. A common class of transcripts with 5’-intron depletion, distinct early coding sequence features, and N1-methyladenosine modification. RNA. 2017 Mar; 23 : 270-283. doi: 10.1261/rna.059105.116



3 - Cenik C, Chua HN, Tarnawsky SP, Derti A, Tasan M, Moore MJ, Palazzo AF, Roth FP. Genome analysis reveals interplay between 5’UTR introns and nuclear mRNA export of secretory and mitochondrial genes. PLoS Genetics. 2011 April; 7(4) : e1001366. doi: 10.1371/journal.pgen.1001366



4 - Cenik C, Derti A, Mellor JC, Berriz GF, Roth FP. Genome-wide functional analysis of human 5'untranslated region introns. Genome Biology. 2010 Mar; 11(3) : R29. doi: 10.1186/gb-2010-11-3-r29



5 - Araya CL*, Cenik C*, Reuter JA, Kiss G, Pande VS, Snyder MP, Greenleaf WG. Systematic identification of significantly mutated regions across cancer types highlights a rich landscape of functional molecular alterations. Nature Genetics. 2016 Feb; 48(2) : 117-25. doi: 10.1038/ng.3471



6 - Kucukural A, Ozadam H, Singh G, Moore MJ, Cenik C. ASPeak an abundance sensitive peak detection algorithm for RIP-Seq. Bioinformatics. 2013 Oct; 29(19) : 2485-6. doi: 10.1093/bioinformatics/btt428



7 - Sephton CF*, Cenik C*, Kucukural A, Dammer EB, Cenik B, Han Y, Dewey CM, Roth FP, Herz J, Peng J, Moore MJ, Yu G. Identification of neuronal RNA targets of TDP-43-containing ribonucleoprotein complexes. Journal of Biological Chemistry. 2011 Jan; 286(2) : 1204 –1215. doi: 10.1074/jbc.M110.190884



8 - Singh G, Kucukural A, Cenik C, Weng Z, Moore MJ. The cellular EJC interactome reveals higher- order mRNP structure and an EJC-SR protein nexus. Cell. 2012 Nov; 151(4) : 750-64. doi: 10.1016/j.cell.2012.10.007



9 - Cenik B*, Cenik C*, Snyder MP, Brown SE. Plasma sterols and depressive symptom severity in a population-based cohort. PLoS ONE. 2017 Sep; 12(9) : e0184382. doi: 10.1371/journal.pone.0184382